Description: Fix gcc warnings.
Author: Michael Bienia <geser@ubuntu.com>
Index: sift/src/Alignment.c
===================================================================
--- sift.orig/src/Alignment.c
+++ sift/src/Alignment.c
@@ -766,7 +766,7 @@ read_psiblast_header_until_first (FILE*
 void
 read_psiblast_header_until_first_alignment (FILE* fp)
 {
-	char line[LARGE_BUFF_LENGTH];
+	char line[LINE_LEN > LARGE_BUFF_LENGTH ? LINE_LEN : LARGE_BUFF_LENGTH];
 
 	read_psiblast_header_until_first (fp);
 	
@@ -783,7 +783,7 @@ read_psiblast_header_until_first_alignme
 int 
 read_psiblast_header_until_first_no_error (FILE* fp,int return_error )
 {
-        char line[MAXLEN];
+        char line[LINE_LEN];
 
         while (!feof (fp) && fgets (line, LINE_LEN, fp) != NULL &&
                 strstr (line, "Sequences producing significant alignments") == NULL)
Index: sift/src/PN_convert.c
===================================================================
--- sift.orig/src/PN_convert.c
+++ sift/src/PN_convert.c
@@ -2032,7 +2032,7 @@ void init_frq_qij()
    else
    {
       fprintf (stderr, "Can't open file '%s': %s.\n", qijname, strerror(errno) );
-      fprintf (stderr, "Current dir:\n", qijname );
+      fprintf (stderr, "Current dir: %s\n", qijname );
       system( "pwd" );
       exit (-1);
    }
Index: sift/src/Psiblast.c
===================================================================
--- sift.orig/src/Psiblast.c
+++ sift/src/Psiblast.c
@@ -302,7 +302,7 @@ get_top_seq (char next_seq_to_add[], Has
 	FILE* psiblastfp;
 	char name[KEY_WIDTH];
 	char *strptr;
-	char line[LARGE_BUFF_LENGTH];
+	char line[LINE_LEN];
 
 
 	if ((psiblastfp = fopen (psiblastres_file, "r")) == NULL)
